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Saturday the 7th of November, 2009 |
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ncbi_tools most recent diffversion 20080302
Scroll down toward the bottom of the page to get installation instructions for ncbi_tools. The raw portfile for ncbi_tools 20080302 is located here: http://ncbi_tools.darwinports.com/dports/science/ncbi_tools/Portfile Find related portfiles with the unique DarwinPorts.com search feature. Check for any related Fink projects here: pdb.finkproject.org/pdb/package.php/ncbi_tools The ncbi_tools Portfile 57375 2009-09-10 08:16:41Z ryandesign PortSystem 1.0 Name: ncbi_tools Version: 20080302 Description: blast is a set of tools for doing nucleotide and protein searches Maintainers: gmail.com:mike.thon Category: science Platform: darwin Homepage: http://www.ncbi.nlm.nih.gov/blast/ fetch.use_epsv no Master Sites: ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/20080302 distfiles ncbi.tar.gz Checksums: md5 f8de9d7264aed7de1d87d2185df2e07c dist_subdir ${name}/${version} worksrcdir use_configure no build.cmd './ncbi/make/makedis.csh' build.target set binaries "Psequin blastall dosimple gil2bin sbtedit asn2ff blastall_old entrcmd idfetch seedtop asn2gb blastcl3 entrez2 impala seqtest asn2idx blastclust errhdr indexpub tbl2asn asn2xml blastpgp fa2htgs makemat test_regexp asndhuff cdscan fastacmd makeset testcore asntool checksub findspl megablast testobj bl2bag.cgi copymat formatdb ncbisort testval bl2seq ddv formatrpsdb nph-viewgif.cgi udv blast debruijn gene2xml psiblast.REAL vecscreen blast.REAL demo_regexp getmesh psiblast_cs.REAL wblast2.REAL blast_cs.REAL demo_regexp_grep getpub rpsblast wblast2_cs.REAL" set manpages "Psequin.1 asnval.1 cleanasn.1 formatdb.1 insdseqget.1 tbl2asn.1 asn2all.1 bl2seq.1 copymat.1 formatrpsdb.1 makemat.1 trna2sap.1 asn2asn.1 blast.1 ddv.1 gbseqget.1 makeset.1 trna2tbl.1 asn2ff.1 blastall.1 debruijn.1 gene2xml.1 megablast.1 udv.1 asn2fsa.1 blastall_old.1 entrez2.1 getmesh.1 nps2gps.1 vecscreen.1 asn2gb.1 blastcl3.1 errhdr.1 getpub.1 rpsblast.1 asn2idx.1 blastclust.1 fa2htgs.1 gil2bin.1 sbtedit.1 asn2xml.1 blastpgp.1 fastacmd.1 idfetch.1 seedtop.1 asndhuff.1 cdscan.1 findspl.1 impala.1 sortbyquote.1 asntool.1 checksub.1 fmerge.1 indexpub.1 spidey.1" destroot { xinstall -m 755 -d ${destroot}${prefix}/share/doc/${name} file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name} foreach binary ${binaries} { xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/ } foreach manpage ${manpages} { xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/ } } Long Description: ${description} livecheck.type regex livecheck.url ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/ livecheck.regex old/(\[0-9\]+) If you haven't already installed Darwin Ports, you can find easy instructions for doing so at the main Darwin Ports page. Once Darwin Ports has been installed, in a terminal window and while online, type the following and hit return:
% cd /opt/local/bin/portslocation/dports/ncbi_toolsYou will then be prompted for your root password, which you should enter. You may have to wait for a few minutes while the software is retrieved from the network and installed for you. Y ou should see something that looks similar to: Make sure that you do not close the terminal window while Darwin Ports is working. Once the software has been installed, you can find further information about using ncbi_tools with these commands: % man ncbi_tools Where to find more information:
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