ncbi_tools  most recent diff

View the most recent changes for the ncbi_tools port at: ncbi_tools.darwinports.com/diff
Scroll down toward the bottom of the page to get installation instructions for ncbi_tools.
The raw portfile for ncbi_tools 20070826 is located here:
http://ncbi_tools.darwinports.com/dports/science/ncbi_tools/Portfile
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Check for any related Fink projects here: pdb.finkproject.org/pdb/package.php/ncbi_tools

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# $Id: Portfile 33351 2008-01-24 13:51:27Z ryandesign macports.org $
PortSystem 1.0
Name: ncbi_tools
Version: 20070826
Description: blast is a set of tools for doing nucleotide and protein searches
Maintainers: michael.thon yahoo.com
Category: science
Platform: darwin
Homepage: http://www.ncbi.nlm.nih.gov/blast/
fetch.use_epsv no
master_sites ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/
distfiles ncbi.tar.gz
checksums md5 c17f7b08c12823e4320661894110dcb1
dist_subdir ${name}/${version}
worksrcdir
use_configure no
build.cmd './ncbi/make/makedis.csh'
build.target
set binaries "Psequin blastclust findspl psiblast.REAL asn2ff blastpgp formatdb psiblast_cs.REAL asn2gb cdscan formatrpsdb rpsblast asn2idx checksub gene2xml sbtedit asn2xml copymat getmesh seedtop asndhuff ddv getpub seqtest asntool debruijn gil2bin tbl2asn bl2bag.cgi demo_regexp idfetch test_regexp bl2seq demo_regexp_grep impala testcore blast dosimple indexpub testobj blast.REAL entrcmd makemat testval blast_cs.REAL entrez2 makeset udv blastall errhdr megablast vecscreen blastall_old fa2htgs ncbisort wblast2.REAL blastcl3 fastacmd nph-viewgif.cgi wblast2_cs.REAL"

set manpages " Nentrez.1 blastall_old.1 findspl.1 makeset.1 Psequin.1 blastcl3.1 fmerge.1 megablast.1 asn2all.1 blastclust.1 formatdb.1 netentcf.1 asn2asn.1 blastpgp.1 formatrpsdb.1 nps2gps.1 asn2ff.1 cdscan.1 gbseqget.1 rpsblast.1 asn2fsa.1 checksub.1 gene2xml.1 sbtedit.1 asn2gb.1 cleanasn.1 getfeat.1 seedtop.1 asn2idx.1 copymat.1 getmesh.1 sortbyquote.1 asn2xml.1 ddv.1 getpub.1 spidey.1 asndhuff.1 debruijn.1 gil2bin.1 tbl2asn.1 asntool.1 entrcmd.1 idfetch.1 trna2sap.1 asnval.1 entrez2.1 impala.1 trna2tbl.1 bl2seq.1 errhdr.1 indexpub.1 udv.1 blast.1 fa2htgs.1 insdseqget.1 vecscreen.1 blastall.1 fastacmd.1 makemat.1"


destroot {
xinstall -d 755 ${destroot}${prefix}/share/doc/${name}
file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name}
foreach binary ${binaries} {
xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/
}
foreach manpage ${manpages} {
xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/
}
}

Long Description: ${description}
livecheck.check moddate

If you haven't already installed Darwin Ports, you can find easy instructions for doing so at the main Darwin Ports page.
Once Darwin Ports has been installed, in a terminal window and while online, type the following and hit return:

%  cd /opt/local/bin/portslocation/dports/ncbi_tools
%  sudo port install ncbi_tools  
Password: 

You will then be prompted for your root password, which you should enter. You may have to wait for a few minutes while the software is retrieved from the network and installed for you. Y ou should see something that looks similar to:

--->  Fetching ncbi_tools
--->  Verifying checksum for ncbi_tools
--->  Extracting ncbi_tools
--->  Configuring ncbi_tools
--->  Building ncbi_tools with target all

--->  Staging ncbi_tools into destroot

--->  Installing ncbi_tools

- Make sure that you do not close the terminal window while Darwin Ports is working. Once the software has been installed, you can find further information about using ncbi_tools with these commands:

%  man ncbi_tools
%  apropos ncbi_tools
%  which ncbi_tools
%  locate ncbi_tools

 Where to find more information: